The Learning Brain

“There’s a slogan in education,” says McGovern Investigator John Gabrieli. “The first three years are learning to read, and after that you read to learn.”

For John Gabrieli, learning to read represents one of the most important milestones in a child’s life. Except, that is, when a child can’t. Children who cannot learn to read adequately by the first grade have a 90 percent chance of still reading poorly in the fourth grade, and 75 percent odds of struggling in high school. For the estimated 10 percent of schoolchildren with a reading disability, that struggle often comes with a host of other social and emotional challenges: anxiety, damaged self-esteem, increased risk for poverty and eventually, encounters with the criminal justice system.

Most reading interventions focus on classical dyslexia, which is essentially a coding problem—trouble moving letters into sound patterns in the brain. But other factors, such as inadequate vocabulary and lack of practice opportunities, hinder reading too. The diagnosis can be subjective, and for those who are diagnosed, the standard treatments help only some students. “Every teacher knows half to two-thirds have a good response, the other third don’t,” Gabrieli says. “It’s a mystery. And amazingly there’s been almost no progress on that.”

For the last two decades, Gabrieli has sought to unravel the neuroscience behind learning and reading disabilities and, ultimately, convert that understanding into new and better education
interventions—a sort of translational medicine for the classroom.

The Home Effect

In 2011, when Julia Leonard was a research assistant in Gabrieli’s lab, she planned to go into pediatrics. But she became drawn to the lab’s education projects and decided to join the lab as
a graduate student to learn more. By 2015, she helped coauthor a landmark study with postdoc Allyson Mackey, that sought neural markers for the academic “achievement gap,” which separates higher socioeconomic status (SES) children from their disadvantaged peers. It was the first study to make a connection between SES-linked differences in brain structure and educational markers. Specifically, they found children from wealthier backgrounds had thicker cortical brain regions, which correlated with better academic achievement.

“Being a doctor is a really awesome and powerful career,” she says. “But I was more curious about the research that could cause bigger changes in children’s lives.”

Leonard collaborated with Rachel Romeo, another graduate student in the Gabrieli lab who wanted to understand the powerful effect of SES on the developing brain. Romeo had a distinctive background in speech pathology and literacy, where she’d observed wealthier students progressing more quickly compared to their disadvantaged peers.

Their research is revealing a fascinating picture. In a 2017 study, Romeo compared how reading-disabled children from low and high SES backgrounds fared after an intensive summer reading intervention. Low SES children in the intervention improved most in their reading, and MRI scans revealed their brains also underwent greater structural changes in response to the intervention. Higher SES children did not appear to change much, either in skill or brain structure.

“In the few studies that have looked at SES effects on treatment outcomes,” Romeo says, “the research suggests that higher SES kids would show the most improvement. We were surprised to
find that this wasn’t true.” She suspects that the midsummer timing of the intervention may account for this. Lower SES kids’ performance often suffer most during a “summer slump,”
and would therefore have the greatest potential to improve from interventions at this time.

However, in another study this year, Leonard uncovered unique brain differences in lower-SES children. Only among lower-SES children was better reasoning ability associated with thicker
cortex in a key part of the brain. Same behavior, different neural signatures.

“So this becomes a really interesting basic science question,” Leonard says. “Does the brain support cognition the same way across everyone, or does it differ based on how you grow up?”

Not a One-Size-Fits-All

Critics of such “educational neuroscience” have highlighted the lack of useful interventions produced by this research. Gabrieli agrees that so far, little has emerged. “The painful thing is the slowness of this work. It’s mind-boggling,” Gabrieli admits. Every intervention requires all the usual human research requirements, plus coordinating with schools, parents, teachers, and so on. “It’s a huge process to do even the smallest intervention,” he explains. Partly because of that, the field is still relatively new.

But he disagrees with the idea that nothing will come from this research. Gabrieli’s lab previously identified neural markers in children who will go on to develop reading disabilities. These markers could even predict who would or would not respond to standard treatments that focus on phonetic letter-sound coding.

Romeo and Leonard’s work suggests that varied etiologies underlie reading disabilities, which may be the key. “For so long people have thought that reading disorders were just a unitary construct: kids are bad at reading, so let’s fix that with a one-size-fits-all treatment,” Romeo says.

Such findings may ultimately help resource-strapped schools target existing phonetic training rather than enrolling all struggling readers in the same program, to see some still fail.

Think Spaces

At the Oliver Hazard Perry School, a public K-8 school located on the South Boston waterfront, teachers like Colleen Labbe have begun to independently navigate similar problems as they try
to reach their own struggling students.

“A lot of times we look at assessments and put students in intervention groups like phonics,” Labbe says. “But it’s important to also ask what is happening for these students on their way to school and at home.”

For Labbe and Perry Principal Geoffrey Rose, brain science has proven transformative. They’ve embraced literature on neuroplasticity—the idea that brains can change if teachers find the right combination of intervention and circumstances, like the low-SES students who benefited in Romeo and Leonard’s study.

“A big myth is that the brain can’t grow and change, and if you can’t reach that student, you pass them off,” Labbe says.

The science has also been empowering to her students, validating their own powers of self-change. “I tell the kids, we’re going to build the goop!” she says, referring to the brain’s ability to make new connections.

“All kids can learn,” Rose agrees. “But the flip of that is, can all kids do school?” His job, he says, is to make sure they can.

The classrooms at Perry are a mix of students from different cultures and socioeconomic backgrounds, so he and Labbe have focused on helping teachers find ways to connect with these children and help them manage their stresses and thus be ready to learn. Teachers here are armed with “scaffolds”—digestible neuro- and cognitive science aids culled from Rose’s postdoctoral studies at Boston College’s Professional School Administrator Program for school leaders. These encourage teachers to be more aware of cultural differences and tendencies in themselves and their students, to better connect.

There are also “Think Spaces” tucked into classroom corners. “Take a deep breath and be calm,” read posters at these soothing stations, which are equipped with de-stressing tools, like squeezable balls, play-dough, and meditation-inspiring sparkle wands. It sounds trivial, yet studies have shown that poverty-linked stressors like food and home insecurity take a toll on emotion and memory-linked brain areas like the amygdala and hippocampus.

In fact, a new study by Clemens Bauer, a postdoc in Gabrieli’s lab, argues that mindfulness training can help calm amygdala hyperactivity, help lower self-perceived stress, and boost attention. His study was conducted with children enrolled in a Boston charter school.

Taking these combined approaches, Labbe says, she’s seen one of her students rise from struggling at the lowest levels of instruction, to thriving by year end. Labbe’s focus on understanding the girl’s stressors, her family environment, and what social and emotional support she really needed was key. “Now she knows she can do it,” Labbe says.

Rose and Labbe only wish they could better bridge the gap between educators like themselves and brain scientists like Gabrieli. To help forge these connections, Rose recently visited Gabrieli’s lab and looks forward to future collaborations. Brain research will provide critical insights into teaching strategy, he says, but the gap is still wide.

From Lab to Classroom

“I’m hugely impressed by principals and teachers who are passionately interested in understanding the brain,” Gabrieli says. Fortunately, new efforts are bridging educators and scientists.

This March, Gabrieli and the MIT Integrated Learning Initiative—MITili, which he also directs—announced a $30 million-dollar grant from the Chan Zuckerberg Initiative for a collaboration
between MIT, the Harvard Graduate School of Education, and Florida State University.

The grant aims to translate some of Gabrieli’s work into more classrooms. Specifically, he hopes to produce better diagnostics that can identify children at risk for dyslexia and other learning
disabilities before they even learn to read.

He hopes to also provide rudimentary diagnostics that identify the source of struggle, be it classic dyslexia, lack of home support, stress, or maybe a combination of factors. That in turn,
could guide treatment—standard phonetic care for some children, versus alternatives: social support akin to Labbe’s efforts, reading practice, or maybe just vocabulary-boosting conversation time with adults.

“We want to get every kid to be an adequate reader by the end of the third grade,” Gabrieli says. “That’s the ultimate goal for me: to help all children become learners.”

Are eyes the window to the soul?

Covert attention has been defined as shifting attention without shifting the eyes. The notion that we can internally pay attention to an object in a scene without making eye movements to it has been a cornerstone of the fields of psychology and cognitive neuroscience, which attempt to understand mental phenomena that are purely internal to the mind, divorced from movements of the eyes or limbs. A study from the McGovern Institute for Brain Research at MIT now questions the dissociation of eye movements from attention in this context, finding that microsaccades precede modulation of specific brain regions associated with attention. In other words, a small shift of the eyes is linked to covert attention, after all.

Seeing the world through human eyes, which have a focused, high-acuity center to the field of vision, requires saccades (rapid movements of the eyes that move between points of fixation). Saccades help to piece together important information in an overall scene and are closely linked to attention shifts, at least in the case of overt attention. In the case of covert attention, the view has been different since this type of attention can shift while the gaze is fixed. Microsaccades are tiny movements of the eyes that are made when subjects maintain fixation on an object.

“Microsaccades are typically so small, that they are ignored by many researchers.” says Robert Desimone, director of MIT’s McGovern Institute for Brain Research and lead author on the study. “We went in and tested what they might represent by linking them to attentional firing in particular brain regions.”

In the study from Desimone and his team, the authors used an infrared eye-tracking system to follow microsaccades in awake macaques. The authors monitored activity in cortical regions of the brain linked to visual attention, including area V4. The authors saw increased neuronal firing in V4, but only when preceded by a microsaccade toward the attended stimulus. This effect on neuronal activity vanished when a microsaccade was directed away from the stimulus. The authors also saw increased firing in the inferior temporal (IT) cortex after a microsaccade, and even found that attention to an object amongst a ‘clutter’ of different visual objects, finding that attention to a specific object in the group was preceded by a microsaccade.

“I expected some links between microsaccades and covert attention,” says lead author of the study Eric Lowet, now a postdoctoral fellow at Boston University. “However, the magnitude of the effect and the precise link to microsaccade onset was surprising to me and the lab. Furthermore, to see these effects also in the IT cortex, which has large receptive fields and is involved in higher-order visual cognition, was striking”.

Why was this strong effect previously missed? The separation of eye movement and attention is so core to the concept of covert attention, that studies often actively seek to separate the visual stimulus by directing attention to a target outside the receptive field of vision, while the subject’s gaze is maintained on a fixation stimulus. The authors are the first to directly test microsaccades toward and away from an attended stimulus, and it was this set up, and the difference in neuronal firing upon separating these eye movements, that allowed them to draw the conclusions made.

“When we first separated attention effects on V4 firing rates by the direction of the microsaccade relative to the attended stimulus,” Lowet explains, “I realized this analysis was a game changer.”

The study suggests several future directions of study that are being pursued by the Desimone lab. Low frequency rhythmic (in the delta and theta range) sampling has been suggested as a possible explanation for attentional modulation. According to this idea, people sample visual scenes rhythmically, with an intrinsic sampling interval of about a quarter of a second.

“We do not know whether microsaccades and delta/theta rhythms have a common generator,” points out Karthik Srinivasan, a co-author on the study and a scientist at the McGovern Institute. “But if they do, what brain areas are the source of such a generator? Are the low frequency rhythms observed merely the frequency-analytic manifestation of microsaccades or are they linked?”

These are intriguing future steps for analysis that can be addressed in light of the current study which points to microsaccades as an important marker for visual attention and cognitive processes. Indeed, some of the previously hidden aspects of our cognition are revealed through our motor behavior after all.

Does our ability to learn new things stop at a certain age?

This is actually a neuromyth, but it has some basis in scientific research. People’s endorsement of this statement is likely due to research indicating that there is a high level of synaptogenesis (formation of connections between neurons) between ages 0-3, that some skills (learning a new language, for example) do diminish with age, and some events in brain development, such as connections in the visual system, are tied to exposure to a stimulus, such as light. That said, it is clear that a new language can be learned later in life, and at the level of synaptogenesis, we now know that synaptic connections are plastic.

If you thought this statement was true, you’re not alone. Indeed, a 2017 study by McGrath and colleagues found that 18% of the public (N = 3,045) and 19% of educators (N = 598) believed this statement was correct.

Learn more about how teachers and McGovern researchers are working to target learning interventions well past so-called “critical periods” for learning.

Yanny or Laurel?

“Yanny” or “Laurel?” Discussion around this auditory version of “The Dress” has divided the internet this week.

In this video, brain and cognitive science PhD students Dana Boebinger and Kevin Sitek, both members of the McGovern Institute, unpack the science — and settle the debate. The upshot? Our brain is faced with a myriad of sensory cues that it must process and make sense of simultaneously. Hearing is no exception, and two brains can sometimes “translate” soundwaves in very different ways.

Feng Zhang elected to National Academy of Sciences

Feng Zhang has been elected to join the National Academy of Sciences (NAS), a prestigious, non-profit society of distinguished scholars that was established through an Act of Congress signed by Abraham Lincoln in 1863. Zhang is the Patricia and James Poitras ’63 Professor in Neuroscience at MIT, an associate professor in the departments of Brain and Cognitive Sciences and Biological Engineering, an investigator at the McGovern Institute for Brain Research, and a core member of the Broad Institute of MIT and Harvard. Scientists are elected to the National Academy of Sciences by members of the organization as recognition of their outstanding contributions to research.

“Because it comes from the scientific community, election to the National Academy of Sciences is a very special honor,” says Zhang, “and I’m grateful to all of my colleagues for the recognition and support.”

Zhang has revolutionized research across the life sciences by developing and sharing a number of powerful molecular biology tools, most notably, genome engineering tools based on the microbial CRISPR-Cas9 system. The simplicity and precision of Cas9 has led to its widespread adoption by researchers around the world. Indeed, the Zhang lab has shared more than 49,000 plasmids and reagents with more than 2,300 institutions across 62 countries through the non-profit plasmid repository Addgene.

Zhang continues to pioneer CRISPR-based technologies. For example, Zhang and his colleagues discovered new CRISPR systems that use a single enzyme to target RNA, rather than DNA. They have engineered these systems to achieve precise editing of single bases of RNA, enabling a wide range of applications in research, therapeutics, and biotechnology. Recently, he and his team also reported a highly sensitive nucleic acid detection system based on the CRISPR enzyme Cas13 that can be used in the field for monitoring pathogens and other molecular diagnostic applications.

Zhang has long shown a keen eye for recognizing the potential of transformative technologies and developing robust tools with broad utility. As a graduate student in Karl Diesseroth’s group at Stanford, he contributed to the development of optogenetics, a light-based technology that allows scientists to both track neurons and causally test outcomes of neuronal activity. Zhang also created an efficient system for reprogramming TAL effector proteins (TALEs) to specifically recognize and modulate target genes.

“Feng Zhang is unusually young to be elected into the National Academy of Science, which attests to the tremendous impact he is having on the field even at an early stage of his career, “ says Robert Desimone, director of the McGovern Institute for Brain Research at MIT.

This year the NAS, an organization that includes over 500 Nobel Laureates, elected 84 new members from across disciplines. The mission of the organization is to provide sound, objective advice on science to the nation, and to further the cause of science and technology in America. Four MIT professors were elected this year, with Amy Finkelstein (recognized for contributions to economics) as well as Mehran Karder and Xiao-Gang Wen (for their research in the realm of physics) also becoming members of the Academy.

The formal induction ceremony for new NAS members will be held at the Academy’s annual meeting in Washington D.C. next spring.

Ann Graybiel wins 2018 Gruber Neuroscience Prize

Institute Professor Ann Graybiel, a professor in the Department of Brain and Cognitive Sciences and member of MIT’s McGovern Institute for Brain Research, is being recognized by the Gruber Foundation for her work on the structure, organization, and function of the once-mysterious basal ganglia. She was awarded the prize alongside Okihide Hikosaka of the National Institute of Health’s National Eye Institute and Wolfram Schultz of the University of Cambridge in the U.K.

The basal ganglia have long been known to play a role in movement, and the work of Graybiel and others helped to extend their roles to cognition and emotion. Dysfunction in the basal ganglia has been linked to a host of disorders including Parkinson’s disease, Huntington’s disease, obsessive-compulsive disorder and attention-deficit hyperactivity disorder, and to depression and anxiety disorders. Graybiel’s research focuses on the circuits thought to underlie these disorders, and on how these circuits act to help us form habits in everyday life.

“We are delighted that Ann has been honored with the Gruber Neuroscience Prize,” says Robert Desimone, director of the McGovern Institute. “Ann’s work has truly elucidated the complexity and functional importance of these forebrain structures. Her work has driven the field forward in a fundamental fashion, and continues to do so.’

Graybiel’s research focuses broadly on the striatum, a hub in basal ganglia-based circuits that is linked to goal-directed actions and habits. Prior to her work, the striatum was considered to be a primitive forebrain region. Graybiel found that the striatum instead has a complex architecture consisting of specialized zones: striosomes and the surrounding matrix. Her group went on to relate these zones to function, finding that striosomes and matrix differentially influence behavior. Among other important findings, Graybiel has shown that striosomes are focal points in circuits that link mood-related cortical regions with the dopamine-containing neurons of the midbrain, which are implicated in learning and motivation and which undergo degeneration in Parkinson’s disorder and other clinical conditions. She and her group have shown that these regions are activated by drugs of abuse, and that they influence decision-making, including decisions that require weighing of costs and benefits.

Graybiel continues to drive the field forward, finding that striatal neurons spike in an accentuated fashion and ‘bookend’ the beginning and end of behavioral sequences in rodents and primates. This activity pattern suggests that the striatum demarcates useful behavioral sequences such, in the case of rodents, pressing levers or running down mazes to receive a reward. Additionally, she and her group worked on miniaturized tools for chemical sensing and delivery as part of a continued drive toward therapeutic intervention in collaboration with the laboratories of Robert Langer in the Department of Chemical Engineering and Michael Cima, in the Department of Materials Science and Engineering.

“My first thought was of our lab, and how fortunate I am to work with such talented and wonderful people,” says Graybiel.  “I am deeply honored to be recognized by this prestigious award on behalf of our lab.”

The Gruber Foundation’s international prize program recognizes researchers in the areas of cosmology, neuroscience and genetics, and includes a cash award of $500,000 in each field. The medal given to award recipients also outlines the general mission of the foundation, “for the fundamental expansion of human knowledge,” and the prizes specifically honor those whose groundbreaking work fits into this paradigm.

Graybiel, a member of the MIT Class of 1971, has also previously been honored with the National Medal of Science, the Kavli Award, the James R. Killian Faculty Achievement Award at MIT, Woman Leader of Parkinson’s Science award from the Parkinson’s Disease Foundation, and has been recognized by the National Parkinson Foundation for her contributions to the understanding and treatment of Parkinson’s disease. Graybiel is a member of the National Academy of Sciences, the National Academy of Medicine, and the American Academy of Arts and Sciences.

The Gruber Neuroscience Prize will be presented in a ceremony at the annual meeting of the Society for Neuroscience in San Diego this coming November.

Beyond the 30 Million Word Gap

At the McGovern Institute for Brain Research at MIT, John Gabrieli’s lab is studying how exposure to language may influence brain function in children.

The Beautiful Brain: The Drawings of Santiago Ramón y Cajal

Opening May 3, 2018

Santiago Ramón y Cajal made transformative discoveries of the anatomy of the brain and nervous system, work that led to his receiving a Nobel Prize in 1906. This founder of modern neuroscience was also an exceptional artist. His drawings of the brain were not only beautiful, but also astounding in their capacity to illustrate and understand the details of brain structure and function.

The Beautiful Brain: The Drawings of Santiago Ramón y Cajal at the MIT Museum is part of a traveling exhibit that will include approximately 80 of Cajal’s drawings, many rarely before seen in the U.S.

These historical works will be complimented by a contemporary exhibition of neuroscience visualizations that are leading to new insights, aided by technologies, many pioneered here at MIT’s McGovern Institute, that allow increasingly more detailed and precise understandings.

The exhibit is scheduled to open on May 3, 2018.


The Beautiful Brain: The Drawings of Santiago Ramón y Cajal was developed by the Frederick R. Weisman Art Museum, University of Minnesota with the CSIC’s Cajal Institute, Madrid, Spain.

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Major exhibition support provided by:

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Sustaining exhibition support provided by:

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Contributing exhibition support provided by:

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This exhibition is generously supported by the Associate Provost for the Arts, Philip Khoury. Additional support has been provided by the Council for the Arts at MIT.

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Warm Wishes for 2018!

This year, we hope you enjoy “Postcards from the Brain” — an illustrative journey featuring brain regions studied by McGovern researchers.

For a closer look at these postcards, including a description of how our researchers are studying these particular regions of the brain, please visit our image gallery.

McGovern Institute 2017 Halloween Party

See below for a full gallery of images from our annual Halloween party.